PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10025172m
Common NameCARUB_v10025172mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRF
Protein Properties Length: 397aa    MW: 43510 Da    PI: 8.2788
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10025172mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.38.5e-26145189145
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                      d+epgrCrRtDGKkWRCsr+v +g+k+CErH+hrgr+rsrk++e+
  Carubv10025172m 145 DPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVET 189
                      79****************************************996 PP

2QLQ46.41.2e-1673105133
              QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 
                      s F+ aQ+q+L+ Q+l+y+y++a++ vP+eLl 
  Carubv10025172m  73 SFFSSAQWQELELQALIYRYMLAGATVPQELLS 105
                      67*****************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-973109IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.85774109IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.1E-1275105IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.046145189IPR014977WRC domain
PfamPF088799.5E-22146188IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006995Biological Processcellular response to nitrogen starvation
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009624Biological Processresponse to nematode
GO:0009631Biological Processcold acclimation
GO:0016036Biological Processcellular response to phosphate starvation
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0050826Biological Processresponse to freezing
GO:0051365Biological Processcellular response to potassium ion starvation
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005524Molecular FunctionATP binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDLQLKQWRS QQQQQTESEE QPSAAKIPKH VYDQIHSQTP TSTALPLFSP EPSSSKLSSL  60
SPDSSSRFPK MGSFFSSAQW QELELQALIY RYMLAGATVP QELLSLLLPI KKSLLHLSPS  120
YFLHHPLQHL PHYQPAWYLG RAAMDPEPGR CRRTDGKKWR CSRDVFAGHK YCERHMHRGR  180
NRSRKPVETP TAVNATATSM ATAATATATT TTSTFAFGGG SSGDEVAGQG GSFFFSAPSN  240
SSSSELLHLS QSCSEMKQES NNINNKRPYE SHNGFGNHRS DGGHILRPFF DDWPRSSLQE  300
ADNSSSPMSS ATCLSISMPG NSSSDVSLKL STGNEEEARS NHNGRDQQNM SWWSGGGSHH  360
HHNHMGGPLA EALRSSSSSS PTSVLHQLGV STQAFH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1174170.0AK117417.1 Arabidopsis thaliana At2g36400 mRNA for unknown protein, complete cds, clone: RAFL17-02-B13.
GenBankAY1026360.0AY102636.1 Arabidopsis thaliana transcription activator (GRF3) mRNA, complete cds.
GenBankBT0264720.0BT026472.1 Arabidopsis thaliana At2g36400 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296027.10.0hypothetical protein CARUB_v10025172mg
SwissprotQ9SJR50.0GRF3_ARATH; Growth-regulating factor 3
TrEMBLR0HU330.0R0HU33_9BRAS; Uncharacterized protein
STRINGBra023066.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.15e-77growth-regulating factor 4